They said 3k+ databases per host, not 3k instances per server. One of the slides said 8 hosts in 3 continents, so each "host" probably has multiple servers.
Some config parameters that will affect memory usage:
Advanced options:
--osv-memory-count-limit=OSV_MEMORY_COUNT_LIMIT
Force a limit on the maximum number of records kept in
the virtual osv_memory tables. The default is False,
which means no count-based limit.
--osv-memory-age-limit=OSV_MEMORY_AGE_LIMIT
Force a limit on the maximum age of records kept in
the virtual osv_memory tables. This is a decimal value
expressed in hours, and the default is 1 hour.
--max-cron-threads=MAX_CRON_THREADS
Maximum number of threads processing concurrently cron
jobs (default 2).
Multiprocessing options:
--workers=WORKERS Specify the number of workers, 0 disable prefork mode.
--limit-memory-soft=LIMIT_MEMORY_SOFT
Maximum allowed virtual memory per worker, when
reached the worker be reset after the current request
(default 671088640 aka 640MB).
--limit-memory-hard=LIMIT_MEMORY_HARD
Maximum allowed virtual memory per worker, when
reached, any memory allocation will fail (default
805306368 aka 768MB).
--limit-request=LIMIT_REQUEST
Maximum number of request to be processed per worker
(default 8192).
Try and play with those.