The Journal Entry must use the Outstanding Account.

This example has two drafts from the bank, one for Payroll and one for Fees, but you can also enter one with a single draft if payroll is done with a single payment.

You then have two outstanding payment records in Odoo (Miscellaneous Matching tab) that can be matched with the corresponding drafts (shown here in gray) from your Bank:

Note: 

• This example uses a separate Payroll Journal, but you can also use the Miscellaneous Journal.  
• You can also setup Reconciliation Models that suggest or process a match during bank reconciliation if the dates and amounts match, and if both the bank and the journal item have the word “pay” in them.